ModBase
ModBase is a database of annotated comparative protein structure models, containing models for more than 3.8 million unique protein sequences.[1] Models are created by the comparative modeling pipeline ModPipe which relies on the MODELLER program.
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| Content | |
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| Description | Database of comparative protein structure models |
| Contact | |
| Research center | University of California at San Francisco |
| Laboratory | Department of Bioengineering and Therapeutic Sciences |
| Authors | Ursula Pieper, Eswar Narayanan, Ben Webb, Andrej Sali |
| Primary citation | Pieper & al. (2011)[1] |
| Release date | 1998 |
| Access | |
| Website | http://salilab.org/modbase |
| Download URL | ftp://salilab.org/databases/modbase |
| Web service URL | http://salilab.org/modweb |
ModBase is developed in the laboratory of Andrej Sali at UCSF. ModBase models are also accessible through the Protein Model Portal.
See also
References
- Pieper, Ursula; Webb Benjamin M; Barkan David T; Schneidman-Duhovny Dina; Schlessinger Avner; Braberg Hannes; Yang Zheng; Meng Elaine C; Pettersen Eric F; Huang Conrad C; Datta Ruchira S; Sampathkumar Parthasarathy; Madhusudhan Mallur S; Sjölander Kimmen; Ferrin Thomas E; Burley Stephen K; Sali Andrej (Jan 2011). "ModBase, a database of annotated comparative protein structure models, and associated resources". Nucleic Acids Res. England. 39 (Database issue): D465-74. doi:10.1093/nar/gkq1091. PMC 3013688. PMID 21097780.
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